Dr. Stephan Jonas

Professor Digital Health

Technical University of Munich
Boltzmannstraße 3
85748 Garching, Germany
+49 (0) 89 289 18 230
health.in.tum.de
jonas[at]in.tum.de
stephan.m.jonas[at]gmail.com

Publications & Presentations

Peer Reviewed Articles

• Kutafina E, Bechtold I, Kabino K, Jonas SM. Recursive neural networks in hospital bed occupancy forecasting. BMC Medical Informatics and Decision Making 2019;19(1):39.
• Date P, Ackermann P, Furey C, Fink IB, Jonas SM, Khokha MK, Khale KT, Deniz E. Visualizing flow in an intact CSF network using optical coherence tomography: implications for human congenital hydrocephalus. Scientific Reports 2019;9(1):6196.
• Jonas SM, Siewers S, Spreckelsen C. Privacy-Preserving Record Grouping and Consent Management Based on a Public-Private Key Signature Scheme: Theoretical Analysis and Feasibility Study. JMIR 2019;21(4):e12300.
• Stang A, Jonas SM, Poole C. Case study in major quotation errors: a critical commentary on the Newcastle–Ottawa scale. European Journal of Epidemiology 2018;33(11):1025-31.
• Burgdorf A, Güthe I, Jovanovic M, Kutafina E, Kohlschein C, Bitsch JA, Jonas SM. The mobile sleep lab app: An open-source framework for mobile sleep assessment based on consumer-grade wearable devices. Computers in Biology and Medicine 2018;103:8-16.
• Deniz E, Jonas SM, Hooper MC, Griffin JN, Choma MA, Khokha MK. Analysis of Craniocardiac Malformations in Xenopus using Optical Coherence Tomography. Scientific Reports 2017;7:42506.
• Kashif M, Jonas SM, Deserno TM. Deterioration of R-wave Detection in Pathology and Noise: A Comprehensive Analysis Using Simultaneous Truth and Performance Level Estimation. IEEE Transactions on Biomedical Engineering 2017;64(9):2163-75. doi:10.1109/TBME.2016.2633277.
• Kutafina E, Laukamp D, Bettermann R, Schroeder U, Jonas S. Wearable Sensors for eLearning of Manual Tasks: Using Forearm EMG in Hand Hygiene Training. Sensors 2016;16(8):1221. doi:10.3390/s16081221.
• Ferrer Cheng PG, Ramos RM, Bitsch JA, Jonas SM, Ix T, Quetulio See PL, Wehrle K. Psychologist in a Pocket: Lexicon Development and Content Validation of a Mobile-Based App for Depression Screening. JMIR mHealth and uHealth 2016;4(3):e88. doi:10.2196/mhealth.5284.
• Sirazitdinova E, Jonas SM, Lensen J, Kochanov D, Houben R, Slijp H, Deserno TM. Towards Efficient Mobile Image-guided Navigation through Removal of Outliers. EURASIP Journal on Image and Video Processing 2016;1:43. doi:10.1186/s13640-016-0146-1.
• Pop-Fele L, Curaj A, Jovanovic M, Jonas SM, Moellmann J, Ghertescu D, Novac OC, Rusu M, Liehn MA. Advanced modular automated calculation of the morpho-histological parameters in myocardial infarction. Discoveries 2016;4:e66. doi:10.15190/d.2016.13.
• Kashif M, Deserno TM, Haak D, Jonas S. Feature description with SIFT, SURF, BRIEF, BRISK, or FREAK? A general question answered for bone age assessment. Computers in Biology and Medicine 2016;68:67-75. doi:10.1016/j.compbiomed.2015.11.006.
• Jonas SM, Sirazitdinova E, Lensen J, Kochanov D, Mayzek H, de Heus T, Houben R, Slijp H, Deserno TM. IMAGO: Image-guided navigation for visually impaired people. Journal of Ambient Intelligence and Smart Environments 2015;7(5):679-92. doi:10.3233/AIS-150334.
• Jonas SM, Deserno TM, Buhimschi CS, Makin J, Choma MA, Buhimschi IA. Smartphone-based diagnostic for preeclampsia: an mHealth solution for administering the Congo Red Dot (CRD) test in settings with limited resources. Journal of the American Medical Informatics Association 2015;ocv015. doi:10.1093/jamia/ocv015.
• Huang BK, Gamm UA, Jonas SM, Khokha MK, Choma MA. Quantitative optical coherence tomography imaging of intermediate flow defect phenotypes in ciliary physiology and pathophysiology. Journal of Biomedical Optics 2015;20(3):030502-030502. doi:10.1117/1.JBO.20.3.030502.
• Haak D, Samsel C, Gehlen J, Jonas SM, Deserno TM. Simplifying electronic data capture in clinical trials: Workflow embedded image and biosignal file integration and analysis via web services. Journal of Digital Imaging 2014;27(5):571-80. doi:10.1007/s10278-014-9694-z.
• Voss B, Wilop S, Jonas S, El-Komy MHM, Schaller J, von Felbert V, Megahed M. Tumor Volume as a Prognostic Factor in Resectable Malignant Melanoma. Dermatology 2014;228:66-70. doi:10.1159/000356121.
• Jonas S, Zhou E, Deniz E, Huang B, Chandrasekera K, Bhattacharya D, Wu Y, Fan R, Deserno TM, Khokha MK, Choma MA. A novel approach to quantifying ciliary physiology: microfluidic mixing driven by a ciliated biological surface. Lab on a Chip 2013;13:4160-4163. doi:10.1039/C3LC50571E.
• Hannig A, Kuth N, Özman M, Jonas S, Spreckelsen C. eMedOffice: A web-based collaborative serious game for teaching optimal design of a medical practice. BMC Medical Education 2012;12:104. doi:10.1186/1472-6920-12-104.
• Deniz E, Jonas S, Khokha MK, and Choma MA. Endogenous contrast blood flow imaging in embryonic hearts using hemoglobin contrast subtraction angiography. Optics Letters 2012;37:2979-2981. doi:10.1364/OL.37.002979. Featured in VJBO (V7, I9).
• Jonas S, Bhattacharya D, Khokha MK, and Choma MA. Microfluidic characterization of cilia-driven fluid flow using optical coherence tomography-based particle tracking velocimetry. Biomedical Optics Express 2011;2:2022-2034. doi:10.1364/BOE.2.002022. Feature of the week 2/12/12 at OCT News.
• C. Buck, T. Gass, Hannig A, J. Hosang, Jonas S, J. Peter, P. Steingrube, and J. H. Ziegeldorf. Data-Mining-Cup 2007: Vorhersage des Einlöseverhaltens. Informatik Spektrum 2008;31(6):591-599. doi:10.1007/s00287-008-0239-z.

Selected Conference Presentations

• Jovanovic M, Seiffarth J, Kutafina E, Jonas SM. Automated Error Detection in Physiotherapy Training. eHealth. 2018 Mai; Vienna, Austria. p. 164-71. Oral presentation.
• Brenner A, Kutafina E, Jonas SM. Automatic Recognition of Epileptiform EEG Abnormalities. MIE. 2018 October; Gothenburg, Sweden. p. 171-5. Oral presentation.
• Bukowski M, Kühn M, Zhao X, Bettermann R, Jonas SM. Gamification of Clinical Routine: The Dr. Fill Approach. Nursing Informatics. 2016 Jun; Geneva, Switzerland. p. 262-6. Oral presentation.
• Baqapuri HI, Wajdan A, Kutafina E, Misgeld B, Jonas SM. Low-cost wearable for fatigue and back-stress measurement in nursing. Nursing Informatics. 2016 Jun; Geneva, Switzerland. p. 372-6. Oral presentation. First place Best Student Paper Award.
• Jonas SM, Deserno TM, Buhimschi CS, Makin J, Choma MA, Buhimschi IA. mHealth Screening von Präeklampsie: Ein molekulares Testverfahren auf dem Smartphone. GMDS annual meeting. 2015 Sept; Krefeld, Germany. Oral presentation.
• Laukamp D, Kutafina E, Jonas SM. Wearables in der praktischen Ausbildung: Handhygienetraining mit dem Myo Armband. GMDS annual meeting. 2015 Sept; Krefeld, Germany. Oral presentation.
• Krämer A, Bettermann R, Mottaghian S, Deserno TM, Jonas SM. Smartphone-basierte Sturzdetektion, Datenübermittlung und Ereignisvisualisierung. GMDS annual meeting. 2015 Sept; Krefeld, Germany. Poster presentation.
• Kutafina E, Laukamp D, Jonas SM. Wearable Sensors in Medical Education: Supporting Hand Hygiene Training with a Forearm EMG. International Conference on Wearable Micro and Nano Technologies for Personalized Health (pHealth 2015). 2015 Jun; Västerås, Sweden. Poster presentation.
• Jonas SM, Hannig A, Spreckelsen C, Thomas TM. Wearable technology as a booster of clinical care. Proc SPIE Med Imag. 2014 Jan; San Diego, CA, USA; 2014. p. 90390F-90390F-6. Oral presentation.
• Deserno TM, Sarandi I, Jose A, Haak D, Jonas S, Specht P, Brandenburg V. Towards quantitative assessment of calciphylaxis. Proc SPIE Med Imag. 2014 Jan; San Diego, CA, USA; 2014. p. 90353C-90353C-8.
• Haak D, Gehlen J, Jonas S, Thomas TM. OC ToGo: bed site image integration into OpenClinica with mobile devices. Proc SPIE Med Img. 2014 Jan; San Diego, CA, USA; 2014. p. 903909-903909-6.
• Jonas S, Zhou E, Huang B, Choma MA, Deserno TM. Quantification of microfluidic dye mixing using front line tracking in curvature scale space. Proc SPIE Med Imag. 2013 Feb; Orlando, Fl, USA; 2013. p. 867206-867206-6. Oral presentation
• Chandrasekera K, Jonas S, Bhattacharya D, Khokha MK, Choma MA. Entropy-based measures of in vivo cilia-driven microfluidic mixing derived from quantitative optical imaging. Proc SPIE Photon West. 2012 Jan; San Francisco, CA, USA; 2012. p. 82073K. Oral presentation

See Google Scholar profile for a more comprehensive list

Book Chapter

• Jonas SM, Deserno TM. Mobile imaging and analytics for biomedical data. In: Reddy CK, Aggarwal, editors. Healthcare data analytics. Boca Ranton: Chapman and Hall/CRC; 2015.

Patents

• Buhimschi I, Buhimschi CS, Choma M, Tagare H, Jonas SM. Methods and compositions for detecting misfolded proteins. US Patent US 2015/0293115.

CV

Education and Academic Experience

• 2019 to present: Technical University of Munich, Munich, Germany Professor Digital Health
• 2014 to 2019: Uniklinik RWTH Aachen, Aachen, Germany Head of Division mHealth at the Department of Medical Informatics
• 2017 to 2019: Uniklinik RWTH Aachen, Aachen, Germany Head of Division Image Processing at the Department of Medical Informatics
• 2010 to 2014: Uniklinik RWTH Aachen, Aachen, Germany Doctoral student in theoretical medicine at the Department of Medical Informatics
• 2009 to 2012: Yale School of Medicine, Yale University, New Haven, CT, USA Lecturer in the Department of Diagnostic Radiology
• Jun 2010 to Oct 2010: Reykjavik University, Reykjavik, Iceland Visiting researcher at the engineering department
• 2007 to 2009: Chair of Computer Science 6, RWTH Aachen, Germany Research assistant
• 2003 to 2009: RWTH Aachen University, Germany Diploma student in Computer Science, subsidiary medicine

Honors and Awards

• 2014: Borchers-Badge for finishing the doctoral studies "with distinction"
• 2009: Ranked 3rd in ICDAR 2009 Arabic Handwriting Recognition Competition